pp_array.h

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//                                                         //
// Copyright (c) 2003-2017 by The University of Queensland //
// Centre for Geoscience Computing                         //
// http://earth.uq.edu.au/centre-geoscience-computing      //
//                                                         //
// Primary Business: Brisbane, Queensland, Australia       //
// Licensed under the Open Software License version 3.0    //
// http://www.apache.org/licenses/LICENSE-2.0              //
//                                                         //
 
#ifndef __PARALLEL_PARTICLE_ARRAY_H
#define __PARALLEL_PARTICLE_ARRAY_H
 
//--- MPI ---
#include <mpi.h>
 
//--- project includes ---
#include "ntable/src/ntable.h"
#include "ntable/src/nt_block.h"
#include "tml/comm/comm.h"
#include "tml/comm/cart_comm.h"
#include "Foundation/vec3.h"
#include "Geometry/Triangle.h"
#include "Geometry/AEdge.h"
 
//--- STL includes ---
#include <vector>
#include <set>
 
using std::vector;
using std::set;
 
//--- IO includes ---
 
class AParallelParticleArray
{
 protected:
  TML_CartComm m_comm;
  int m_timestamp;
 
 public:
  AParallelParticleArray(TML_Comm *comm, const std::vector<unsigned int> &dims);
  AParallelParticleArray(TML_Comm *comm, const std::vector<unsigned int> &dims, const std::vector<bool> &circ);
  // virtual destructor
  virtual ~AParallelParticleArray(){};
 
  // get communicator
  TML_CartComm getComm() const {return m_comm;};
 
  int getTimeStamp(){return m_timestamp;}; 
 
  // get ids of boundary particles 
  virtual set<int> getBoundarySlabIds(int,int) const=0;
  virtual set<int> get2ndSlabIds(int,int) const=0;
 
  // check if pos is in inner part
  virtual bool isInInner(const Vec3&)=0;
};
 
 
template<typename T>
class ParallelParticleArray : public AParallelParticleArray
{
 public: // types
  typedef T_Handle<typename NeighborTable<T>::pairlist> PairListHandle;
  typedef typename NeighborTable<T>::pairlist::iterator PairListIterator;
  typedef T_Handle<typename NeighborTable<T>::particlelist> ParticleListHandle;
  typedef typename NeighborTable<T>::particlelist::iterator ParticleListIterator;
 
 private:
  NeighborTable<T>* m_nt;
  Vec3 m_minpos,m_maxpos; 
  double m_xshift,m_yshift,m_zshift; 
  bool m_circ_edge_x_up,m_circ_edge_x_down; 
  static const int m_exchg_tag;
  
  // helper fnc
  template<typename P> void exchange_single(P (T::*rdf)(),void (T::*wrtf)(const P&),NTSlab<T>,NTSlab<T>,int,int);
 
 protected:
 
 public:
  ParallelParticleArray(TML_Comm *comm, const vector<unsigned int> &dims,const Vec3 &min,const Vec3 &max, double rmax,double alpha);
  ParallelParticleArray(TML_Comm *comm, const vector<unsigned int> &dims, const vector<bool> &circ,const Vec3 &min,const Vec3 &max, double rmax,double alpha);
  ~ParallelParticleArray();
 
  // info func
  Vec3 getMinPos()const {return m_minpos;};
  Vec3 getMaxPos()const {return m_maxpos;};
  vector<int> getCommCoords() const {return m_comm.get_coords();};
  vector<int> getCommDims() const {return m_comm.get_all_dims();}; 
  int size(){return m_nt->size();};
  int getInnerSize(){return (m_nt->inner()).size();};
 
  // particle insert ops
  void insert(const T&); 
  void insert(const vector<T>&); 
 
  // check if pos is in inner part
  virtual bool isInInner(const Vec3&);
 
  // particle access (ugly!)
  T* getParticlePtrByIndex(int);
  T* getParticlePtrByPosition(const Vec3&);
 
  // rebuild
  void rebuild();
 
  //--- collective particle ops ---
  // variable exchange 
  template<typename P> void exchange(P (T::*rdf)(),void (T::*wrtf)(const P&));
 
  // call member func for single particle by id
  void forParticle(int,void (T::*rdf)());
  template <typename P> void forParticle(int,void (T::*rdf)(P),const P&);
 
  // call member func for single particle by tag
  void forParticleTag(int,void (T::*rdf)());
  template <typename P> void forParticleTag(int,void (T::*rdf)(P),const P&);
  void forParticleTagMask(int,int,void (T::*rdf)());
  template <typename P> void forParticleTagMask(int,int,void (T::*rdf)(P),const P&);
 
  // call member func for all particles, different nr. of params
  void forAllParticles(void (T::*rdf)()); 
  void forAllParticles(void (T::*rdf)()const); 
  template <typename P> void forAllParticles(void (T::*rdf)(P),const P&);
  
  // call member func for all inner particles
  template <typename P> void forAllInnerParticles(void (T::*rdf)(P&),P&);
 
  class ParticleIterator
  {
  public:
    typedef NTBlock<T> NtBlock;
    typedef T Particle;
    typedef typename NtBlock::iterator BlockIterator;
 
    ParticleIterator(const NtBlock &ntBlock);
 
    bool hasNext() const;
 
    Particle &next();
 
    int getNumRemaining() const;
 
  private:
    NtBlock       m_ntBlock;
    BlockIterator m_it;
    int           m_numRemaining;
  };
 
  ParticleIterator getInnerParticleIterator();
 
  // particle data access functions
  template <typename P> void forAllParticlesGet(P&,typename P::value_type (T::*rdf)() const);
  template <typename P> void forAllInnerParticlesGet(P&,typename P::value_type (T::*rdf)() const);
  template <typename P> vector<pair<int,P> > forAllParticlesGetIndexed(P (T::*rdf)() const);
  template <typename P> vector<pair<int,P> > forAllInnerParticlesGetIndexed(P (T::*rdf)() const);
 
  // particle data access functions with tag check
  template <typename P> void forAllTaggedParticlesGet(P&,typename P::value_type (T::*rdf)() const,int,int);
  template <typename P> void forAllTaggedInnerParticlesGet(P&,typename P::value_type (T::*rdf)() const,int,int);
  template <typename P> vector<pair<int,P> > forAllTaggedParticlesGetIndexed(P (T::*rdf)() const,int,int);
  template <typename P> vector<pair<int,P> > forAllInnerTaggedParticlesGetIndexed(P (T::*rdf)() const,int,int);
 
  // geometric data access function 
  template <typename P> void forPointsGetNearest(P&,typename P::value_type (T::*rdf)() const,const Vec3&,double,double,double,int,int,int);
 
  // get ids of boundary particles 
  virtual set<int> getBoundarySlabIds(int,int) const;
  virtual set<int> get2ndSlabIds(int,int) const;
 
  //--- get neigborlist stuff ---
  PairListHandle getFullPairList(){return m_nt->getFullList();};
  PairListHandle getNewPairList(){return m_nt->getNewList();};
  ParticleListHandle getParticlesAtPlane(Vec3 o,Vec3 n){return m_nt->getParticlesAtPlane(o,n);};
  ParticleListHandle getParticlesNearSphere(Vec3 c,double r){return m_nt->getParticlesNearSphere(c,r);};
  ParticleListHandle getParticlesNearTriangle(const Triangle& t){return m_nt->getParticlesNearTriangle(t);};
  ParticleListHandle getParticlesNearEdge(const AEdge* e){return m_nt->getParticlesNearEdge(e);};
  ParticleListHandle getParticlesNearPoint(const Vec3& v){return m_nt->getParticlesNearPoint(v);};
  ParticleListHandle getAllParticles(){return m_nt->getAllParticles();};
  
  void getAllInnerParticles(vector<T>&);
 
  //--- checkpointing ---
  void saveCheckPointData(std::ostream&); 
  void loadCheckPointData(std::istream&); 
 
  //--- output (for debugging)---
  template <typename TT>
  friend ostream& operator<<(ostream &, const ParallelParticleArray<TT> &);
};
 
#include "ppa/src/pp_array.hpp"
 
#endif //__PARALLEL_PARTICLE_ARRAY_H