# parameters:
# if this parameters file is used ( -p parameters1.txt ) then these values override the command line arguments --MCMC_*

# length of burnIn
burnIn 1000

# initial number of samples, doubles every time targetScaleReduction is not met, until it reaches sampleNmax
samplesN 1000
# max number of samples generated in one iteration
# after generating samplesNmax sampels, the program finishes even if some transcripts have not met the targetScaleReduction criteria
samplesNmax 30000

# number of samples actually recorded
samplesSave 500

# number of parallel chains
chainsN 4

# target scale reduction for the parameters
# this applies only when option --scaleReduction is used
# this parameter decides end of sampling
# if you want to end simulation increase it, this file is read every time sampling finnishes k-th iteration of (2^(k-1))*samplesN samples
#targetScaleReduction 1.2


# parameters for the prior distributions
#dirAlpha 1
#dirBeta 1
#betaAlpha 10
#betaBeta 2


